Index

Symbols

--chemical pemt-run-patent-extractor command line option --chemical-data pemt-run-patent-extractor command line option --chromedriver-path pemt-run-patent-extractor command line option pemt-run-pemt command line option --data pemt-run-chemical-extractor command line option pemt-run-pemt command line option --input-type pemt-run-chemical-extractor command line option pemt-run-pemt command line option --name pemt-run-chemical-extractor command line option pemt-run-patent-extractor command line option pemt-run-pemt command line option

--no-chemical pemt-run-patent-extractor command line option --no-uniprot pemt-run-chemical-extractor command line option pemt-run-pemt command line option --os pemt-run-patent-extractor command line option pemt-run-pemt command line option --uniprot pemt-run-chemical-extractor command line option pemt-run-pemt command line option --year pemt-run-patent-extractor command line option pemt-run-pemt command line option

E

extract_chemicals() (in module pemt.chemical_extractor.experimental_data_extraction)

extract_patent() (in module pemt.patent_extractor.patent_enrichment)

G

get_chemical_names() (in module pemt.utils)

get_hgnc_id() (in module pemt.utils)

H

harmonize_chemicals() (in module pemt.patent_extractor.patent_chemical_harmonizer)

hgnc_to_chembl() (in module pemt.utils), [1]

M

module pemt pemt.utils

P

pemt module pemt-run-chemical-extractor command line option --data --input-type --name --no-uniprot --uniprot pemt-run-patent-extractor command line option --chemical --chemical-data --chromedriver-path --name --no-chemical --os --year

pemt-run-pemt command line option --chromedriver-path --data --input-type --name --no-uniprot --os --uniprot --year pemt.utils module

U

uniprot_to_chembl() (in module pemt.utils), [1]